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Example sentences for: scop

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SCOP browser
The DSBH fold that comprises the core domain of the 2OG-Fe(II) dioxygenases is also present in a large number of proteins typified by the arabinose-binding domain of the transcription regulator AraC, plant seed proteins such as vicilin, and oxalate oxidase ([ 29]; see SCOP [ 12]).
The substrates are bound within a spacious cavity formed by the interior of the DSBH (see the Structural Classification of Proteins (SCOP) [ 12]).
(It is classified as a separate domain in SCOP 1.59.)
Visual examination of the structure of this insert domain revealed a topology with elements of both a sandwich and a barrel, and two "waist"-like structures that are characteristic of the sandwich-barrel hybrid motif (SBHM) fold [ 75 76 ] (see also the SCOP database [ 65 ] ). The SBHM fold is present in biotin/lipoate carrier domains and their homologs found in a variety of enzymes and transporters [ 76 ] . A DALI search with this insert domain from the β subunit of Thermus DDRP showed similarity to the SBHMs from various biotin/lipoate-binding enzymes, such as acetyl-CoA carboxylase (1bdo) or dihydrolipoamide acetyltransferase (1iyu) with Z scores of ~6 and RMSD ~2.