Example sentences for: scop

How can you use “scop” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Each domain may subsequently be interrogated with the SCOP browser to provide superfamily, family and fold level information.

  • For PDB structures 1gp4 and 1gp6 (putative leucoanthocyanidin dioxygenase, NCBI NR database 17 October 2001 release), 123D was able to correctly predict the fold to be similar to 1hig (clavaminate synthase-like SCOP superfamily).

  • Finally, the SCOP classification of protein structures by fold (Figure 4a) and by family (Figure 4b) provides a convenient way to catalog the relative occurrences of structures in A. thaliana . With respect to folds, the membrane all-alpha fold, alpha-alpha superhelix and protein kinase-like (PK-like) fold ranked highest.

  • Here, we have used the fold and superfamily assignments from the SCOP [ 14] and Superfamily databases [ 15] and the family classifications from InterPro [ 16, 17].

  • SCOP domain sequences filtered at 90% identity [ 26 ] are downloaded from the Astral database [ 27 ] . PDB chains are clustered at 90% identity and parsed with PDP [ 15 ] to provide additional domains, including those not yet assigned by SCOP.


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