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Example sentences for: scop

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SCOP domain sequences filtered at 90% identity [ 26 ] are downloaded from the Astral database [ 27 ] . PDB chains are clustered at 90% identity and parsed with PDP [ 15 ] to provide additional domains, including those not yet assigned by SCOP.
MatDB, based on PEDANT analysis of Arabidopsis thaliana , provides structural annotations using SCOP domain position specific scoring matrix (PSSM) profiles.
Folds such as the SH3-like barrels, the PAS-like fold, the OB fold, the double-stranded β-helix, the β-propeller and rubredoxin-like zinc ribbons are predominantly non-catalytic domains that are widely represented in multiple functional contexts, with roles such as small-molecule binding, nucleic-acid binding and interaction with other proteins [ 3, 4, 5] (see also the SCOP [ 6] and CATH [ 7] databases).
(It is classified as a separate domain in SCOP 1.59.)
The region of structural similarity shared by the catalytic domain of the β' subunit of the DDRPs and the above proteins corresponds to a distinct globular fold known as the double-psi beta-barrel (DPBB) [ 62 63 64 ] . The SCOP database included the RNA polymerase subunits in the multidomain protein class but mentions the presence of a DPBB domain in each of the β and β' subunits ( [ 65 ] ; see below).