Words similar to rss
Example sentences for: rss
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Similarly, the ZAS-C pentamer together with its complement form the canonical RSS heptamer palindrome "CACTGTG".
We perform this computation for each RSS and take the average ln P ( S ) over all RSS.
The patterns of nucleotide diversity at individual positions are similar for both 12- and 23-RSS: the initial CAC of the heptamer is invariant, the remaining four positions of the heptamer are moderately diverse, the spacer is highly diverse, and the A tract of the nonamer (positions 5 through 7) is better conserved than the other nonamer positions (Figure 1a).
RSS in the dataset receive higher RIC values (and WM0 and WM1 values, see below) during genome searches than during model development, because the sequence for which RIC is calculated is excluded from the dataset during model development, a property of leave-one-out cross-validation [ 67].
We had previously shown by methylation interference analysis that KRC/ZAS-C bound specifically to the sequence TGTGG within the context of the canonical RSS heptamer plus the immediately flanking guanine [ 14 ] . Because the pentamer motif for KRC/ZAS-C predicted by MEME completely matched with the empirical results, we conclude that the two pentameric motifs discovered by MEME are likely authentic binding sites for KRC/ZAS-N as well.
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