Words similar to rss

Example sentences for: rss

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This wider disparity may be important when searching for functional but degenerate signals such as cryptic and pseudogene-associated RSS.
Using the ZAS-N- and ZAS-C-selected DNA sequences as input, the MEME program discovered motifs containing sequences similar to the κB or Sb transcriptional enhancer motifs as well as the conserved heptamer or nonamer elements of the RSS.
We also modeled RSS with weight matrices based on an order zero or order one Markov model (reviewed in [ 27]).
While 62% (219/356) of these RSS contain a consensus heptamer, just 16% (57/356) contain a consensus nonamer and only 13% (48/356) contain both a consensus heptamer and a consensus nonamer.
After cloning and DNA sequencing, the KRC-selected sequence datasets were analyzed by the computer program Multiple Expectation Maximum for Motif Elicitation (MEME version 3.0) to generate sets of position specific scoring matrices (PSSMs) or motifs [ 30 ] . When the program was set to identify wider sequences (= 9 nucleotides) the PSSMs were homologous to Sb [ 29 ] , the κB motif [ 31 ] , and the canonical heptamer and nonamer elements of the RSS [ 32 ] . However, shortening the width of the motifs to 5 nucleotides, the target length for the C 2 H 2 zinc finger pairs of the tramtrack [ 33 ] , the ZAS-N dataset yielded two motifs, "GGTAT" and "T(T/C)TT(T/G)G" and the ZAS-C dataset yielded a single motif, "TGTGG".