Example sentences for: protonated

How can you use “protonated” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Protein protonation states were modeled as in the related HIV-1 protease MD simulation study [ 56 ] . All protein residues were modeled in their charged state except for one of the two aspartic acid groups (Asp 25 and Asp 25') in the active site since previous studies [ 57 58 59 ] have shown that at least one of these two aspartic acids is protonated.

  • Attachment involves noncovalent interactions such as electrostatic interactions, where the negatively charged phosphate backbone of the oligonucleotide is attracted to the positively charged surface of the glass slide (for example, a surface containing protonated alkyl amines).

  • We used a protonated Asp 25' and deprotonated Asp 25 for all HIV-1 protease-ligand complexes.

  • The pKa of the thiolates clearly plays an important role, as thiolates are more reactive than their protonated counterparts.

  • The terminal residues of both monomers were also protonated (Pro 1, Pro 1', Phe 99 and Phe 99').


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