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Example sentences for: patternfind

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Motifs and consensus domains can also be used as query patterns to search the protein databases using Patternfind http://www.isrec.isb-sib.ch/software/PATFND_form.html.
For Patternfind, the following parameters are used:
, entire surrogate sequence, motifs, etc.), we simultaneously search several public databases using programs such as Blastp, MAST (Motif Alignment and Search Tool) and Patternfind (see Materials and Methods).
Database searches using Patternfind at the ISREC server were performed using parameters appropriate for short protein queries and were successful in identifying a human gene product, subunit p170 of eIF3 (Figure 3).
Same protein/ORF picked up by BLAST searches using different parameters, or by both BLAST and Patternfind) and compare sequence of protein in this region with other peptide surrogates containing this motif.