Words similar to paml

Example sentences for: paml

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All phylogenetic reconstructions were performed with the PHYLIP and PAML software packages [ 54 55 ] .
Pairwise K a /K s tests were carried out using PAML 3.12 [ 22] with runmode = -2, as outlined in [ 20].
We used the EVOLVER program of the PAML package [ 54] to generate sequences drifting under neutral Jukes-Cantor evolution.
Estimates of K a and K s in Table 2were obtained using the method of Yang and Nielson [ 81], which accounts for differences in nucleotide and codon frequencies as well as transition:transversion rate bias, implemented in PAML 3.12 [ 22].
Shimodaira-Hasegawa tests [ 17 ] were performed in PAML [ 30 ] (JTT-F option, fixed gamma); p-values for each topology were recorded.