Words similar to pam

Example sentences for: pam

How can you use “pam” in a sentence? Here are some example sentences to help you improve your vocabulary:

The distance matrix was obtained using Protdist with a Dayhoff Pam matrix.
The clustering procedure PAM was used in the comparison; however, one should keep in mind that different clustering procedures can generate different partitions of the same data, possibly leading to different inferences about the number of clusters.
Pairwise evolutionary distances between the sequences in concatenated alignments were calculated using the Dayhoff PAM model as implemented in the PROTDIST program of the PHYLIP package [ 44 ] . A distance tree was constructed from the resulting distance matrix by using the least-square [ 46 ] method as implemented in the FITCH program of PHYLIP [ 44 ] . The maximum likelihood tree was constructed with the JTT-F model of amino acid substitutions [ 47 ] , as implemented in the ProtML program of the MOLPHY package [ 48 ] , by optimizing the least squares tree with local rearrangements.
When the PAM procedure is applied to the NCI60 dataset using the 200 genes with the largest variance and varying the number of clusters K ≤ 8, only five types of cell lines tend to cluster together (CNS, colon, leukemia, melanoma, and renal cell lines).
When the PAM procedure is applied to the leukemia dataset using the 100 genes with the largest variance, the results are as follows.