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Example sentences for: mrd

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Much of the MRD (~36%) is composed of contigs that are less than 10 kb long and are therefore of limited utility for the LTR_STRUC program, which finds only full-length elements (rice gypsy -like elements are typically longer than 10 kb and are not entirely contained in such short contigs).
On the basis of a survey of the available portion of the GBRD and MRD, we estimate the copy number of Osr8 to be around 1,100 (more than any other copia -like family).
Subsequently, LTR_STRUC was used to scan the non-redundant MRD, a product of the Monsanto Rice Genome Sequencing Project.
The MRD is based on an initial dataset of 3,391 BACs distributed across the genome of O. sativa cv.
More recently, in an effort to determine the relative copy numbers of the various families and identify additional elements not picked up in our initial survey with LTR_STRUC, we have used representative sequences from each retrotransposon family identified in this study as queries to conduct BLAST searches against both the MRD and the GBRD.