Words similar to molphy
Example sentences for: molphy
How can you use “molphy” in a sentence? Here are some example sentences to help you improve your vocabulary:
Briefly, this process involved the construction of a least-squares tree using the FITCH program or a neighbor-joining tree using the NEIGHBOR program (both from the Phylip package) [ 38], followed by local rearrangement using the Protml program of the Molphy package [ 37] to arrive at the maximum likelihood (ML) tree.
The MOLPHY and Phylip software packages were used for phylogenetic analyses [ 46 47 ] .
Briefly, this process involved the construction of a least-squares tree using the FITCH program or a neighbor-joining tree using the NEIGHBOR program (both from the Phylip package) [ 48], followed by local rearrangement using the Protml program of the Molphy package [ 50] to arrive at the maximum-likelihood (ML) tree.
Briefly, this involved the construction of a least-squares tree using the FITCH program or a neighbor-joining tree using the NEIGHBOR program (both from the PHYLIP package) [ 46], followed by local rearrangement using the Protml program of the Molphy package [ 42] to arrive at the maximum likelihood (ML) tree.
Pairwise evolutionary distances between the sequences in concatenated alignments were calculated using the Dayhoff PAM model as implemented in the PROTDIST program of the PHYLIP package [ 44 ] . A distance tree was constructed from the resulting distance matrix by using the least-square [ 46 ] method as implemented in the FITCH program of PHYLIP [ 44 ] . The maximum likelihood tree was constructed with the JTT-F model of amino acid substitutions [ 47 ] , as implemented in the ProtML program of the MOLPHY package [ 48 ] , by optimizing the least squares tree with local rearrangements.
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