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Gene lists for the Mu11KsubA, Mu11KsubB, Hu6800, MG-U74av2, HG-U95av2 and RG-U34a Affymetrix chips are available for download as additional data files with this article or from the Barlow website [ 23].
Transcript profiling with Affymetrix GeneChips (Affymetrix, Santa Clara, CA) was performed using the Mu11KsubA and subB chips containing ~11,000 probe sets.
We look at a collection of 12 Mu11KsubA chips hybridized to mRNA extracts from different mouse brain regions (see Materials and methods).
Although these particular data are from a subset of the Mu11KsubA chips used for Figures 1and 2, our experience is that these are very typical of GeneChip hybridization data from numerous chip series.
These experiments covered three Affymetrix chip types: Hu35kSubA, Hu6800, and Mu11kSubA.