Example sentences for: jpred

How can you use “jpred” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Secondary-structure prediction using the Jpred method [ 19], with a multiple alignment of the KilA-N domain used as the input, pointed to an α + β fold with four conserved strands and at least two conserved helices.

  • Multiple sequence alignments were generated using the T_Coffee program [ 39 ] and the output was adjusted using PSI-BLAST search results and secondary structure predictions, which were conducted using the PHD [ 40 41 ] and Jpred [ 42 ] programs.

  • While these newly detected proteins have a somewhat distinct conservation pattern from the originally detected set (Figure 1), their secondary structure predicted using the JPred program [ 38] closely matches that predicted for the originally detected set.

  • This alignment was used to predict their secondary structure using the JPRED and PHD methods; these predictions pointed to an α + β domain with a core of five β-strands and five α-helices (Fig.

  • Protein secondary structure was predicted using a multiple alignment as the input for the JPRED program [ 19].


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