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Example sentences for: jpred

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This alignment was used to predict their secondary structure using the JPRED and PHD methods; these predictions pointed to an α + β domain with a core of five β-strands and five α-helices (Fig.
While these newly detected proteins have a somewhat distinct conservation pattern from the originally detected set (Figure 1), their secondary structure predicted using the JPred program [ 38] closely matches that predicted for the originally detected set.
Protein secondary structure was predicted using a multiple alignment as the input for the JPRED program [ 19].
Protein secondary structure was predicted using a multiple alignment as the input for the JPRED and PHD programs [ 42 43 44 ] . Preliminary clustering of proteins was done using the BLASTCLUST program with empirically determined length and score threshold cut off values (For documentation see ftp://ftp.ncbi.nih.gov/blast/documents/README.bcl).
Multiple sequence alignments were generated using the T_Coffee program [ 39 ] and the output was adjusted using PSI-BLAST search results and secondary structure predictions, which were conducted using the PHD [ 40 41 ] and Jpred [ 42 ] programs.