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Example sentences for: icmb
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The sequence alignments used for this analysis are maintained by us at the University of Texas; these alignments, containing all publicly available sequences used in the analysis, are or will be available from the CRW Site http://www.rna.icmb.utexas.edu(Table 2).
The Comparative RNA Web Site http://www.rna.icmb.utexas.eduis hosted on a Sun Microsystems Enterprise 250 dual-processor server.
Each RNA structure model presented here is based upon a single reference sequence, chosen as the most representative for that molecule (Table 1); for example, E. coli is the preferred choice as the reference sequence for rRNA (5S, 16S, and 23S), based on the early and continued research on the structure and functions of the ribosome [ 77 78 ] . Each of the six structure models (5S, 16S and 23S rRNA, group I and II introns, and tRNA) in the "Current Structure Models for Reference Organisms" page http://www.rna.icmb.utexas.edu/CSI/2STR/contains six or seven different diagrams for that molecule: Nucleotide, Tentative, Helix Numbering, Schematic, Histogram, Circular, and Matrix of All Possible Helices.
The number of different tRNA secondary structure models is approximately 2.5 × 10 19; there are approximately 10 393and 10 740possible structure models for 16S and 23S rRNA, respectively (see CRW Methods http://www.rna.icmb.utexas.edu/METHODS/).
Approximately 8500 16S and 16S-like rRNA sequences and 1050 23S and 23S-like rRNA sequences were collected from all branches of the phylogenetic tree, as shown in Section 2, "Nucleotide Frequency and Conservation Information" and in Table 2. These sequences have been aligned and analyzed with several covariation algorithms, as described in more detail in the "Predicting RNA Structure with Comparative Methods" section of the CRW Site http://www.rna.icmb.utexas.edu/METHODS/and in Section 2A.
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