Words similar to homeologs

Example sentences for: homeologs

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However, the E -value for each BLAST hit was quite different between TBLASTX and BLASTN, suggesting that an arbitrary threshold E -value is critical to determine acceptance of BLAST matches between evolutionarily distant nucleotide sequences and to place the homeologs on Arabidopsis chromosomes.
MSR1 contained 25 intervening genes between the homeologs of TG269 and CT190.
Moreover, two recent comparative sequence analyses using monocots versus Arabidopsis [ 29] and dicots versus Arabidopsis [ 11] clearly showed that exon sizes are well conserved in homeologs even between monocots and dicots, whereas intron length varied in rice versus barley and tomato versus Arabidopsis . In BLAST searches using either the processed nucleotide sequence or the predicted protein sequence of an Arabidopsis gene, the score of each BLAST match was clearly higher and the E -value was significantly lower when compared to the use of either non-processed nucleotide sequence or intergenic nucleotide sequence.
First, the BLASTN program at TAIR was used to identify microsyntenic regions in Arabidopsis containing homeologs of tester markers (tomato RFLPs) in similar order within a relatively small physical interval (1-2 cM).
Because Arabidopsis MSR1 contained homeologs in common with three RFLP markers in the dgt region of tomato, we used it as our main target region to search for corresponding tomato homeologs.