Words similar to homeologs

Example sentences for: homeologs

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The second microsyntenic region (MSR2) spanned two Arabidopsis BAC clones, F11l11 (AL079347) and M4E13 (AL022023), and was also located on chromosome 4, but only yielded homeologs for tomato markers TG269 and CT190 ( E -values of 1e -3and 8e -3, respectively).
However, the E -value for each BLAST hit was quite different between TBLASTX and BLASTN, suggesting that an arbitrary threshold E -value is critical to determine acceptance of BLAST matches between evolutionarily distant nucleotide sequences and to place the homeologs on Arabidopsis chromosomes.
First, the BLASTN program at TAIR was used to identify microsyntenic regions in Arabidopsis containing homeologs of tester markers (tomato RFLPs) in similar order within a relatively small physical interval (1-2 cM).
Because Arabidopsis MSR1 contained homeologs in common with three RFLP markers in the dgt region of tomato, we used it as our main target region to search for corresponding tomato homeologs.
The Arabidopsis homeologs of markers TG269 (AT4g38850), TG389 (AT4g38730), and CT190 (AT4g38580) encode a small auxin-upregulated protein (SAUR), a hypothetical protein of unknown function (HP) and a farnesylated protein (FP), respectively.