Words similar to hapla
Example sentences for: hapla
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MI00244.cl, for example, had homology to 47 ESTs in our collection from other Tylenchida species including root-knot nematodes M. javanica, M. hapla and M. arenaria , cyst nematodes H. glycines and G. rostochiensis , and the lesion nematode Pratylenchus penetrans with E-values from 7e-78 to 3e-05.
Thus, the absence of candidates in M. hapla is likely to be due to a combination of the small number of unique ESTs analyzed (because of redundancy in the data), and possibly overall quality of the raw ESTs, rather than to a lack of laterally acquired genes in the genome.
In C. elegans , two genes each encode unusual bifunctional enzymes containing both isocitrate lyase and malate synthase domains [ 49 ] . Since the isocitrate lyase domain lies within the amino-terminal half of the C. elegans bifunctional enzyme and none of the Meloidogyne EST reads stretches across both domains, further sequencing of the 3' end of cDNA clones from the M. hapla or M. javanica isocitrate lyase ESTs will be necessary to determine whether the Meloidogyne genus contains a bifunctional glyoxylate enzyme homolog similar to that of
We describe here a comprehensive two-step search for HGT candidates in M. incognita, M. javanica and M. hapla using EST data [ 22 28 29 ] . Genome-to-genome comparisons were made to discover patterns of presence and absence that would indicate horizontally acquired genes.
3.1) was not observed in this EST collection, but the first putative Tylenchida homologs of this gene have subsequently appeared from our further EST sequencing ( M. hapla BM883225, and M. javanica BI324412).