Words similar to gshbs

Example sentences for: gshbs

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We ran Shotgun with a query set containing six eukaryotic GshBs, eight bacterial GshBs, eight S6 modification enzymes (four from bacteria and four from archaea), and four proteins of unknown function (three from bacteria and one from the archaeon Methanococcus jannaschii ). Sample outputs are shown in Figure 7. Generally, sequences were found by either bacterial GshBs and the S6 modification enzymes, or by eukaryotic GshB proteins, but not by both groups.
Therefore, a different motif-finding algorithm, MEME 3.0 [ 46, 47], was used to analyze a divergent set of GshBs, along with several of the proteins related to the bacterial GshBs.
A set of GshBs was assembled by searching the NCBI protein database using either GshB or glutathione synthetase as query words, and from the outputs of BLAST searches with the E. coli and S. cerevisiae proteins as query sequences.
This recruitment apparently took place independently in the bacterial and eukaryotic lineages, since the sequence of the eukaryotic GshB is remarkably different from that of the bacterial GshBs, despite the structural similarities between these two proteins.
We feel that the evidence for a true evolutionary relationship between the eukaryotic GshBs and the ATP-grasp superfamily is rather weak given the evidence available at this time.