Words similar to fpc
Example sentences for: fpc
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Additional data files are available online as follows: transcriptional units; computational prediction; FPC, e-PCR, RH and assembly maps; functional annotation; tissue expression profiles; a global view of the human genome; density of genomic features; comparisons to genetic and RH maps; clusters and compartments; and clustering of ontological groups.
The exon index is an integrated table generated by a Sybase relational database, consisting of chromosome number, fingerprinted contig (FPC) ID, FPC contig order, BAC contig ID, BAC contig order, BAC contig orientation, starting position of exon on BAC contig, end position of exon on BAC contig, exon orientation, transcript orientation (available from GenBank, IMAGE, UniGene, HINT and dbEST), evidence (transcript, protein, gene prediction, ORF, Pfam), database name (Table 1), feature (poly(A) signal, CpG island, Genscan boundary), starting position on exon (or feature), end position on exon (or feature), score (BlastN, BlastX).
The first gap (see additional data file 1), is also present in the FPC contigs, between ctg16020 and ctg16021, whereas the other two have been filled in.
The resulting contigs were then ordered and oriented according to the FPC order and orientation information in the UCSC genome assembly, resulting in a numeric sorting order for all the individual contigs.
Of 83 RPCI-11 clones in our contigs, 63 were present in the FPC database; 1 was not placed on a contig, 6 were placed on contigs of different chromosomes, and 56 in three chromosome 16 contigs, ctg16020, ctg16021 and ctg16024.
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