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Example sentences for: e-value
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The following files are available with the online version of this article: the e-values of the best matches for the initial BLASTX searches against bacteria, C. elegans and Drosophila for the WMi dataset (Additional data file 1), together with a mapping file (Additional data file 2) that gives the MI contig number associated with each filename; the best match and e-value for the BLASTX search of the WMj dataset against bacteria (Additional data file 3), C. elegans (Additional data file 4) and Drosophila (Additional data file 5); the e-value for the best match to bacteria, C. elegans and Drosophila resulting from a TBLASTX search for the NMi dataset (Additional data file 6), the NMj dataset (Additional data file 7), the NMh dataset (Additional data file 8), where a value of 100 indicates no match found; a text file with details of the data given in each of these dataset files (Additional data file 9); the alignment in Phylip format used to calculate the NodL tree (Additional data file 10); the alignment in Phylip format of the original sequences, before any manual adjustments were made (Additional data file 11); and a key giving the gi number listed in the alignment for each species (Additional data file 12).
On the basis of both amino-acid sequence similarity (Table 3) and a Pfam [ 36 ] HMM search (e-value 4.3e -24), it is clear that the RKN glutamine synthetase is a GSI homolog, implying a prokaryotic origin.
We limited our investigation to elements located within 2 KB of the transcriptional start site and that had an e-value less than 3E-02.
The best match and e-value for the BLASTX search of the WMj dataset against C. elegans
In contrast to these findings for M. incognita where most clusters had homology, BLAST searches with EST clusters from the filarial nematode B. malayi showed far fewer database matches with the same e-value cut-off of 10 -5 [ 52 ] - 57% versus 79%.
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