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Example sentences for: dtu

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An alignment output from this source was used to create a dendrogram using TreeTop [ 45 ] with PHYLIP output (default parameters) at a node of the European Molecular Biology Network http://www.genebee.msu.su [ 47 ] . Potential phosphorylation sites were identified using NetPhos 2.0 http://www.cbs.dtu.dk/services/NetPhos [ 48 ] . After alignment with CLUSTAL W, identical and similar amino acids in Figure 3were identified using MacBoxshade 2.15 http://www.isrec.isb-sib.ch/ftp-server/boxshade/MacBoxshade.
N-linked glycosylation sites were predicted using the Center for Biological Sequence Analysis NetNGlyc 1.0 Prediction Server http://www.cbs.dtu.dk/services/NetNGlyc/.
Analysis of O-linked glycosylation by the CBS NetOGlyc 2.0 Prediction Server http://www.cbs.dtu.dk/services/NetOGlyc/identified two unique (rabbit Thr93 and Thr267) and three common (rabbit Thr66, Thr263, and Ser45) O-linked glycosylation sites in rabbit vs. human/monkey myocilin.
1 Database http://www.cbs.dtu.dk/services/SignalP/.
[ 45 ] http://www.cbs.dtu.dk/~gorodkin/appl/slogo.htmlto derive the sequence logos and the information content of individual sites was calculated according to the expression of Hertz and Stormo [ 17 ] . Type 2 logos were drawn in which the height of the nucleotides in the sequence column represented their frequency in proportion to their expected frequency.