Words similar to basepairs

Example sentences for: basepairs

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The PCR primers (Table 2) were designed to contain restriction enzyme sites for cloning of the amplicon into the pHIP vector downstream of the hsp65 promoter as well as the eight basepairs (bp) upstream of the start codon of the gene being cloned.
Using the 5' end of the TMOD2 cDNA, we searched the high throughput genomic sequences (HTGS) database and identified a sequence, NT 010204, that contained 100% identity to the 69 basepairs of TMOD2 5' UTR and contained a consensus GT donor splice site.
In hydroxyl radical footprinting, the small, highly reactive hydroxyl radical (•OH) attacks the deoxyribose sugars along the DNA backbone with no sequence or base specificity, thereby providing a high resolution of structural information [ 27 28 ] . A total of eight to nine distinct hydroxyl radical protected regions were observed of three to five basepairs in size for each DNA strand that extended over a 97 bp region (Figure 4).
If we insist that at least 3 different factors contribute to the module with individual average copy numbers of at least 1 the number of modules reduces to 169, and eliminating all candidates with 80 or more basepairs masked by the Tandem Repeat Remover gave a final list of 146 modules.
The extensive contacts that APE1 makes to these positions are mediated by molegos it does not share with DNase 1. Molegos 6, 7a and 10 all have residues within hydrogen bonding distance of the three basepairs 3' of the AP-site.