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Example sentences for: amigo

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Alternatively, one can explore the dataset by browsing through the controlled vocabulary using a modified version of the Amigo Gene Ontology browser, which we call ImaGO [ 28].
The latter is similar in format to the visualization in the AmiGO browser display [ 1 ] . However, each category is annotated to reflect the number of genes from the user's experiment assigned to that category plus the number assigned to its progeny categories (Figure 1a).
The left-hand panel lists the genes, the databases from which their identities were derived, and optional up- and down-arrows to indicate under- or over-expression; the middle panel shows a tree visualization of categories in the style of the AmiGO browser [ 1 ] and, in addition, provides a visualization of the flagged genes in the particular microarray experiment.
The GO categorization scheme (go_200205-assocdb.sql) of classification by biological process, cellular component, and molecular function was used to classify clusters based on the existing mappings of InterPro domains to the GO hierarchy [ 36 ] . Mappings were stored in a local MySQL database and displayed using the AmiGO browser (16 May 2002) [ 100 ] ( M. incognita mappings at [ 101 ] ).
We developed a modified version of the Amigo Gene Ontology Browser, ImaGO [ 28], which incorporates the anatomy ontologies and the image data.