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Example sentences for: ybak

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JEvTrace parent trace analysis, which relies on tracing the conservation of the progenitor sequences of a single selected node (Figure 3a), identified a number of neutral polar and hydrophobic amino acids conserved in the YbaK subclade on the conserved lysine face of YbaK (Figure 3a, top).
JEvTrace analysis suggests that YbaK is involved in a protein-protein interaction requiring a binding site with hydrophobic and polar patches, and an oxyanion hole opposite a conserved lysine.
The three subclades are YbaK (S 2 in Figure 3a), an insertion domain in the acceptor stem of prokaryotic prolyl-tRNA synthetases (S
The YbaK fold is related to a circular permutation and truncation of the C-lectin fold.
Significantly, the loop immediately above the oxyanion hole is disordered in the YbaK PDB 1DBX structure.