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The drawings of "molego blocks" and structures (Figures 2, 3, 4and 7), contact plots of protein/DNA (Figures 5, 6), and calculation of the RMSD between similar segments (Table 2) were done with MOLMOL http://www.mol.biol.ethz.ch/wuthrich/software/molmol/ [ 52 ] . The RMSD values in Table 1were calculated using SwissPDB viewer and the "fit selected residues" option.