Words similar to wormpep
Example sentences for: wormpep
How can you use “wormpep” in a sentence? Here are some example sentences to help you improve your vocabulary:
To identify cases where M. incognita and C. elegans share homologous genes which have been surveyed in C. elegans for knockout phenotype using RNAi, a list of all 7,212 available C. elegans RNAi experiments (5 May 2002) from WormBase [ 56 ] was compared to the list of all M. incognita clusters with significant homology matches to the C. elegans Wormpep v.54 protein database.
Thus, 9,718 (49%) sequences from wormpep 43 could be assigned to one or more Pfam families.
03202001 and wormpep 43 against Pfam 6.6.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
In fact, ESTs from our parasitic nematode sequencing project are being continually mapped to the C. elegans genome [ 56 ] and used by Wormpep curators for this purpose.
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