Words similar to wormpep
Example sentences for: wormpep
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Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
03202001 and wormpep 43 against Pfam 6.6.
Thus, 9,718 (49%) sequences from wormpep 43 could be assigned to one or more Pfam families.
Mapping of ESTs from other nematode species can also detect genes contained in the C. elegans genome yet not previously recognized, and therefore missing from Wormpep, as well as recognized genes where not all exons have been correctly predicted.
03202001, a flatfile database of 25,579 A. thaliana amino acid sequences (hypothetical, predicted and experimentally verified) that have been identified as part of the Arabidopsis Genome Initiative (AGI) http://www.arabidopsis.org/info/agi.html, and wormpep 43, a flatfile database of 19,730 C. elegans amino acid sequences http://www.sanger.ac.uk/Projects/C_elegans/wormpep/.
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