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Example sentences for: wormpep

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To identify cases where M. incognita and C. elegans share homologous genes which have been surveyed in C. elegans for knockout phenotype using RNAi, a list of all 7,212 available C. elegans RNAi experiments (5 May 2002) from WormBase [ 56 ] was compared to the list of all M. incognita clusters with significant homology matches to the C. elegans Wormpep v.54 protein database.
Mapping of ESTs from other nematode species can also detect genes contained in the C. elegans genome yet not previously recognized, and therefore missing from Wormpep, as well as recognized genes where not all exons have been correctly predicted.
.2421700) matched regions of the genome where genes were predicted in later versions of Wormpep (WP 88, WP 73 and WP 65, respectively) indicating the usefulness of ESTs from other nematodes in predicting C. elegans coding regions.
03202001, a flatfile database of 25,579 A. thaliana amino acid sequences (hypothetical, predicted and experimentally verified) that have been identified as part of the Arabidopsis Genome Initiative (AGI) http://www.arabidopsis.org/info/agi.html, and wormpep 43, a flatfile database of 19,730 C. elegans amino acid sequences http://www.sanger.ac.uk/Projects/C_elegans/wormpep/.
Thus, 9,718 (49%) sequences from wormpep 43 could be assigned to one or more Pfam families.