Words similar to wormpep
Example sentences for: wormpep
How can you use “wormpep” in a sentence? Here are some example sentences to help you improve your vocabulary:
In fact, ESTs from our parasitic nematode sequencing project are being continually mapped to the C. elegans genome [ 56 ] and used by Wormpep curators for this purpose.
03202001, a flatfile database of 25,579 A. thaliana amino acid sequences (hypothetical, predicted and experimentally verified) that have been identified as part of the Arabidopsis Genome Initiative (AGI) http://www.arabidopsis.org/info/agi.html, and wormpep 43, a flatfile database of 19,730 C. elegans amino acid sequences http://www.sanger.ac.uk/Projects/C_elegans/wormpep/.
Thus, 9,718 (49%) sequences from wormpep 43 could be assigned to one or more Pfam families.
.2421700) matched regions of the genome where genes were predicted in later versions of Wormpep (WP 88, WP 73 and WP 65, respectively) indicating the usefulness of ESTs from other nematodes in predicting C. elegans coding regions.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
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