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Example sentences for: wmi

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Analyses of the WMi and WMj data were performed via a local installation of WU-BLAST 2.0 [ 48 ] . Each sequence in WMi and WMj was extracted into individual FASTA format files using Perl scripts and submitted for three six-phase translated WU-BLASTX searches, once each against the C. elegans , Drosophila and bacterial protein databases.
Interestingly, manual inspection revealed that all four sequences did have significant matches to C. elegans , but passed through our initial phylogenetic filter because the bacterial matches were stronger than those for C. elegans or Drosophila . The 12 final candidates in WMi had no significant match to C. elegans or Drosophila in the preliminary screen.
Recent BLAST searches at nematode.net [ 30 ] against all Meloidogyne ESTs, including sequences not available when our analyses were first conducted confirm that the chorismate mutase gene is absent from WMi and WMj, although a single, significant match to an M. arenaria chorismate mutase EST was revealed.
The e-values of the best matches for the initial BLASTX searches against bacteria, C. elegans and Drosophila for the WMi dataset
Sequences were obtained from the Parasitic Nematode Sequencing Project (PNSP) [ 30 ] including clustered Meloidogyne ESTs built with the NemaGene approach [ 28 ] . We analyzed 1,799 M. incognita (WMi) sequences and 3,119 M. javanica (WMj) sequences from these PNSP clusters.