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Example sentences for: usm

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For ease of illustration and to emphasize USM's general validity, the test dataset used to describe implementation of the algorithm consists of two stanzas of a Poem by Wendy Cope, "The Uncertainty of the Poet" [ 14 ] . In the Discussion section, USM was also applied to the DNA sequence of the threonine operon of Escherichia coli K-12 MG1655, obtained from the University of Winsconsin E. coli Genome Project http:/www.genetics.wisc.edu, and to its 5'3' first frame proteomic translation obtained by using SwissProt on line translator http://www.expasy.ch/tools/dna.html.
The original implementation of the standard USM was created in Matlab and used 64-bit floating point coordinates.
The extraction of Markov chain transition tables from USM representations, both forward and backward, is included in the accompanying web-based application (see Abstract).
Two examples applying both the standard and binary USM approaches were prepared to illustrate the difference in results obtained from overestimated distance and exact similar segment length determination.
USM of biological sequences