Words similar to unrooted

Example sentences for: unrooted

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The alignment of Runt domain amino acid sequences was used to construct unrooted trees by several complementary approaches (neighbour-joining, maximum-likelihood, and maximum-parsimony, described in Methods).
The concept of speciation and duplication is only meaningful on rooted gene trees, but the neighbor joining algorithm infers unrooted trees.
For all three possible unrooted tree topologies maximum-likelihood values and posterior probabilities were calculated using in-house JAVA programs that were written utilizing classes from the Phylogenetic Analysis Library version 1.0 [ 54 ] and parts of Vanilla package version 1.0 [ 54 ] . If not indicated otherwise, likelihood values were estimated using the automatically selected suitable substitution model (chosen from BLOSUM62, CPREV, Dayhoff, JTT, MTREV24, VT and WAG) with no ASRV.
Figure 8shows an unrooted tree of SstT proteins.
TrpEb proteins divide into two distinctly different groups, as illustrated by the unrooted tree shown in Figure 2. The major group, denoted TrpEb_1, includes the well-studied enzymes from such organisms as E. coli, Salmonella typhimurium, and B. subtilis.