Words similar to unrooted

Example sentences for: unrooted

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The concept of speciation and duplication is only meaningful on rooted gene trees, but the neighbor joining algorithm infers unrooted trees.
For all three possible unrooted tree topologies maximum-likelihood values and posterior probabilities were calculated using in-house JAVA programs that were written utilizing classes from the Phylogenetic Analysis Library version 1.0 [ 54 ] and parts of Vanilla package version 1.0 [ 54 ] . If not indicated otherwise, likelihood values were estimated using the automatically selected suitable substitution model (chosen from BLOSUM62, CPREV, Dayhoff, JTT, MTREV24, VT and WAG) with no ASRV.
4. An unrooted phylogenetic tree is inferred for each of the x multiple alignments by neighbor joining [ 22 ] , resulting in x gene trees.
[ 30] pointed out that the elongated branch of C. trachomatis TrpEa, but not of C. psittaci TrpEa, on an unrooted phylogenetic tree of the TrpEa family was consistent with a likely pseudogene status for the former.
TrpEb proteins divide into two distinctly different groups, as illustrated by the unrooted tree shown in Figure 2. The major group, denoted TrpEb_1, includes the well-studied enzymes from such organisms as E. coli, Salmonella typhimurium, and B. subtilis.