Words similar to unrooted

Example sentences for: unrooted

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For all three possible unrooted tree topologies maximum-likelihood values and posterior probabilities were calculated using in-house JAVA programs that were written utilizing classes from the Phylogenetic Analysis Library version 1.0 [ 54 ] and parts of Vanilla package version 1.0 [ 54 ] . If not indicated otherwise, likelihood values were estimated using the automatically selected suitable substitution model (chosen from BLOSUM62, CPREV, Dayhoff, JTT, MTREV24, VT and WAG) with no ASRV.
[ 30] pointed out that the elongated branch of C. trachomatis TrpEa, but not of C. psittaci TrpEa, on an unrooted phylogenetic tree of the TrpEa family was consistent with a likely pseudogene status for the former.
TrpEb proteins divide into two distinctly different groups, as illustrated by the unrooted tree shown in Figure 2. The major group, denoted TrpEb_1, includes the well-studied enzymes from such organisms as E. coli, Salmonella typhimurium, and B. subtilis.
Figure 7presents an unrooted radial tree that shows the chlamydial proteins to comprise a distinct cluster.
The alignment of Runt domain amino acid sequences was used to construct unrooted trees by several complementary approaches (neighbour-joining, maximum-likelihood, and maximum-parsimony, described in Methods).