Words similar to trp-pathway
Example sentences for: trp-pathway
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As BLAST hits must be considered imperfect indicators of nearest-neighbor homologs [ 38], the conclusion that the operonic trp -pathway genes are of cyanobacterial lineage origin was confirmed more rigorously by examination of extensive trees (available upon request) constructed for each trp protein of Anabaena and Nostoc . For the Trp-pathway proteins, all the cyanobacterial proteins clustered together, regardless of whether they were Anabaena or Nostoc paralogs or whether they were the singly represented proteins of Synechocystis, Synechococcus , or Prochlorococcus . The same result was obtained for AroA Iβ protein trees.
For all of the operonic Anabaena/Nostoc Trp-pathway proteins used as queries, homolog sequences from other cyanobacteria ( Synechocystis, Synechococcus, Prochlorococcus ) were the remaining top hits returned in the BLAST queue.
Although generally uncommon, complete dispersal of Trp-pathway genes is characteristic of the non-filamentous cyanobacteria, Aquifex aeolicus and Chlorobium tepidum . The ancestral state of trp gene organization has been asserted (G.X.
Although this generalization also applies to Anabaena/Nostoc , this latter lineage is unique among cyanobacteria in its possession of an additional set of Trp-pathway genes (lacking only trpC ) that coexist within an apparent operon.
All cyanobacteria possess each of the seven Trp-pathway genes at dispersed loci, and individual trees of proteins corresponding to these dispersed genes are phylogenetically congruent.