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Example sentences for: thermotoga
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The hyperthermophilic topoisomerase I from Thermotoga maritima has been shown to coordinate one Zn(II) with a unique tetracysteine motif Cys-X-Cys-X 16 -Cys-X-Cys but Zn(II) binding is not required for relaxation activity [ 33 ] . The sequence of this unique tetracysteine motifs is somewhat different from those present in other type IA topoisomerases in that the other tetracysteine motifs always had at least two amino acids separating the pairs of cysteines (Cys-X 2-11 -Cys), instead of just one amino acid (Cys-X-Cys) in T. maritima topoisomerase I [ 33 ] . Therefore the structure and function of the single Zn(II) binding motif in T. maritima may differ from the multiple Zn(II) binding motifs in E. coli topoisomerase I. Direct interaction between DNA and the T. maritima Zn(II) binding motif has not been demonstrated.
Maximum-likelihood trees were constructed for each of these COGs, and a breakdown of nearest neighbors was derived for species and groups involved in each of the non-trivial or questionable branchings discussed above ( Crenarchaea, Thermotoga, Aquifex, Deinococcus, Mycobacterium, Synechocystis, spirochetes, chlamydia, and ε-proteobacteria).
Thermotoga , E ~10 -3) and, interestingly, also a SBHM in the N-terminal region of the NusG protein from Thermotoga maritima (E = 2 × 10 -7, iteration 2).
Although widely distributed in the Bacteria, it is not present in Thermotoga, Aquifex, Chlorobium, Geobacter and Rhodopseudomonas.
One noteworthy finding was that in the genome quartet including Synechocystis sp., Halobacterium sp., Aquifex aeolicus and Thermotoga maritima the grouping of
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