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Example sentences for: sptrreal

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Each gene was placed into one of four 'validation' categories: Perfect match to SPTRreal (annotated peptide of identical length with 100% sequence identity), Single AA substitutions (annotated peptide of identical length with ≥ 99% sequence identity), Significant mismatch (annotated peptide and SPTRreal entry do not align over their entire length, but do contain aligned spans of 40 residues or 20% peptide length, with at least 97% sequence identity), or Poor match (poor or no BLAST hits).
SPTRREAL is composed of 3,687 D. melanogaster sequences from the SWISS-PROT and TrEMBL protein databases [ 31] and provides a curated protein-sequence database with a high level of annotation, a minimal level of redundancy and the absence of any hypothetical or computational gene models.
However, in most cases discrepancies appeared to be due to strain-specific polymorphisms or errors in the reported DNA sequence on which the SPTRreal entries were based (see Materials and methods).
In addition, brief 'discrepancy' reports are generated that describe each SPTRREAL mismatch clearly.
In some cases, annotation errors were detected and gene models were modified to produce a translation matching the SPTRreal sequence.