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Example sentences for: sptrreal
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SPTRREAL is composed of 3,687 D. melanogaster sequences from the SWISS-PROT and TrEMBL protein databases [ 31] and provides a curated protein-sequence database with a high level of annotation, a minimal level of redundancy and the absence of any hypothetical or computational gene models.
D. melanogaster sequences (SPTRreal) to the annotated peptides using BLASTP [ 22].
However, in most cases discrepancies appeared to be due to strain-specific polymorphisms or errors in the reported DNA sequence on which the SPTRreal entries were based (see Materials and methods).
In addition, brief 'discrepancy' reports are generated that describe each SPTRREAL mismatch clearly.
ClustalW [ 34] and showalign [ 35] are used to generate a multiple alignment from the annotated peptides for the gene and the corresponding SPTRREAL peptide or peptides.
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