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Example sentences for: sptrreal

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In Release 3, about 75% of all genes with a cognate in SPTRreal are in the Perfect match and Single AA substitution categories (2,764 out of 3,687).
SPTRREAL is composed of 3,687 D. melanogaster sequences from the SWISS-PROT and TrEMBL protein databases [ 31] and provides a curated protein-sequence database with a high level of annotation, a minimal level of redundancy and the absence of any hypothetical or computational gene models.
For the first two categories, the SPTRreal peptide was allowed to match a portion of the annotated peptide if it was designated as a 'fragment' of the full peptide sequence (125 or 3.4% of SPTRreal genes are designated with this tag).
In other cases, discrepancies may be due to strain polymorphisms, errors in the reported DNA sequence on which the SPTRreal entries were based, or undetected errors in either the Release 3 annotation or sequence.
Each gene was placed into one of four 'validation' categories: Perfect match to SPTRreal (annotated peptide of identical length with 100% sequence identity), Single AA substitutions (annotated peptide of identical length with ≥ 99% sequence identity), Significant mismatch (annotated peptide and SPTRreal entry do not align over their entire length, but do contain aligned spans of 40 residues or 20% peptide length, with at least 97% sequence identity), or Poor match (poor or no BLAST hits).