Example sentences for: sim

How can you use “sim” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Sim4wrap

  • At LBNL, Release 3 BAC sequence assemblies were also compared to the Release 2 sequence from that region using Sim4 to analyze the large-scale assembly, and Sim3 to identify base-pair differences.

  • From this BLAST report summary sim4wrap parses out the sequence identifiers and filters the original database to produce a temporary FASTA data file that contains only these sequences.

  • The evidence datasets used included: gene prediction based on Genie [ 20] and GENSCAN [ 21]; Sim4 alignments to EST and full-insert cDNA sequencing reads derived from the BDGP cDNA project [ 29, 30], the earlier analysis of the Adh region [ 44], and dbEST (for example [ 16]); FlyBase ARGS [ 1]; GenBank/EMBL/DDBJ entries identified as Drosophila cDNA sequences [ 6, 7, 8, 9, 10, 11] and error report submissions to FlyBase [ 1, 2]; and BLASTX protein homology data.

  • A third way that large libraries are often dereplicated requires submitting the sequences as batch files to a database (either local or remote), then searching the same sequences against the updated database using BLAST or Sequence Similarity http://www.cme.msu.edu/RDP/docs/sim_matrix_issues.html.


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