Example sentences for: sim

How can you use “sim” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • 5' and 3' UTRs were truncated, and the remaining sequences were aligned to the genomic sequence using Sim4 [ 44], to map the exon-intron structure.

  • Sim4 [ 18] is a highly useful and largely accurate way of aligning full-length cDNA and EST sequences against the genome [ 19].

  • To find micro-exons, we analyzed the results of sim4 alignments using all 5,016 Ceres cDNAs.

  • We also compared the nucleotide sequence of each clone to the Release 3 genome sequence [ 14] using Sim4 and to the Release 3 predicted CDS with the highest BLAST score.

  • The evidence datasets used included: gene prediction based on Genie [ 20] and GENSCAN [ 21]; Sim4 alignments to EST and full-insert cDNA sequencing reads derived from the BDGP cDNA project [ 29, 30], the earlier analysis of the Adh region [ 44], and dbEST (for example [ 16]); FlyBase ARGS [ 1]; GenBank/EMBL/DDBJ entries identified as Drosophila cDNA sequences [ 6, 7, 8, 9, 10, 11] and error report submissions to FlyBase [ 1, 2]; and BLASTX protein homology data.


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