Example sentences for: sim

How can you use “sim” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • For sim4 the filtering parameters are as follows.

  • We used publicly available tools (MEGABLAST [ 17] and SIM4 [ 18]) to map the exon-intron splicing structures of the relevant set of ESTs and mRNAs from candidate UniGene clusters onto draft assemblies of the human and mouse genomes [ 19, 20].

  • This pipeline aligns Drosophila ESTs, cDNA sequences, and other sequences in GenBank using sim4 [ 53], performs DNA and protein sequence similarity searches of the GenBank and SwissProt/TrEMBL databases using BLASTX and TBLASTX, and executes the gene-prediction algorithms Genie [ 68] and Genscan [ 69].

  • We used sim4 [ 53] and MUMmer [ 73] to realign these five scaffolds, and the sequence extending beyond the aligned portions of the Release 3 euchromatic sequence contigs was extracted with a 60-bp overlap and included in the WGS3 heterochromatic sequence.

  • If the gap filling sequence showed 90% Sim4 similarity to the neighboring sequences, it was classified as a tandem repeat.


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