Words similar to seg

Example sentences for: seg

How can you use “seg” in a sentence? Here are some example sentences to help you improve your vocabulary:

The cutoff scores are set at an expectation value of E= 10 -6using the standard SEG and XNU filters for low-complexity regions [ 47].
Before use in PSI-BLAST searches, the NlpC domain was evaluated for compositional bias using the SEG program [ 65].
The programs used include SEG [ 28 ] for low-complexity region, COILS [ 29 ] for coiled coils, TMHMM [ 30 ] for transmembrane region, PSORT [ 31 ] for subcellular location and signalP [ 32 ] for signal peptides.
All BLAST searches used default parameters and low-complexity filtering with the programs DUST or SEG.
The non-redundant (NR) database of protein sequences (National Center for Biotechnology Information, NIH, Bethesda) was searched using the BLASTP program [ 100 ] . Position-specific scoring matrix (PSSM) searches were conducted using the PSI-BLAST program, typically with a PSSM inclusion expectation (E) value threshold of 0.01, and were iterated until convergence [ 100 101 ] . Prior to PSI-BLAST searches, query sequences were evaluated for compositional bias using the SEG program [ 102 ] . If no such bias was detected, searches were run with the composition-based statistics turned off, in order to maximize sensitivity [ 103 ] . Multiple alignments of protein sequence were constructed using the T_Coffee program [ 104 ] , followed by manual correction based on the PSI-BLAST results.