Example sentences for: seg

How can you use “seg” in a sentence? Here are some example sentences to help you improve your vocabulary:

  • Complexity analysis using the SEG program showed that the reported PAS domain mapped to a region that was predicted to be entirely non-globular.

  • This conjecture was also supported by an analysis of sequence complexity of the polypeptide using the SEG program [ 27 ] .

  • The non-redundant (NR) database of protein sequences (National Center for Biotechnology Information, NIH, Bethesda) was searched using the BLASTP program [ 100 ] . Position-specific scoring matrix (PSSM) searches were conducted using the PSI-BLAST program, typically with a PSSM inclusion expectation (E) value threshold of 0.01, and were iterated until convergence [ 100 101 ] . Prior to PSI-BLAST searches, query sequences were evaluated for compositional bias using the SEG program [ 102 ] . If no such bias was detected, searches were run with the composition-based statistics turned off, in order to maximize sensitivity [ 103 ] . Multiple alignments of protein sequence were constructed using the T_Coffee program [ 104 ] , followed by manual correction based on the PSI-BLAST results.

  • All BLAST searches used default parameters and low-complexity filtering with the programs DUST or SEG.

  • Before use in PSI-BLAST searches, the PRC domain was evaluated for compositional bias using the SEG program [ 36].


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