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Included are 32,735 sequences from Meloidogyne species ( M. incognita 12,752, M. hapla 11,049, M. javanica 5,600, M. arenaria 3,334), as well as ESTs from cyst nematode species ( G. rostochiensis 5,934, H. glycines 4,327, G. pallida 1,832), and the lesion nematode ( P. penetrans 2,048).
Use of SL1 by transcripts is estimated at 70% in C. elegans [ 60 ] , more than 80% in Ascaris lumbricoides [ 61 ] , and approximately 60% in G. rostochiensis (Ling Qin, personal communication).
Sixty-four ESTs had significant homology to the putative fatty-acid-binding protein Sec-2, confirming the abundant expression of this gene reported in L2 cDNA libraries from M. incognita [ 29 ] and the cyst nematodes G. rostochiensis and G. pallida cDNA [ 30 ] . Sec-2 is secreted by plant-parasitic nematodes at relatively high levels [ 34 ] . Several abundantly expressed genes are also horizontal gene transfer candidates (see below).
MI00244.cl, for example, had homology to 47 ESTs in our collection from other Tylenchida species including root-knot nematodes M. javanica, M. hapla and M. arenaria , cyst nematodes H. glycines and G. rostochiensis , and the lesion nematode Pratylenchus penetrans with E-values from 7e-78 to 3e-05.
The most extensively studied HGT candidates are four genes encoding β-1,4-endoglucanase, initially identified in the cyst nematodes G. rostochiensis and H. glycines [ 18 19 ] . These four genes (NemaGene Contig IDs MI00537, MI01011, MI01381 and MI01842) [ 30 ] appear to define two sets of paralogs formed before divergence of the cyst and root-knot nematodes.
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