Words similar to rmsd

Example sentences for: rmsd

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Here multiple groups predicted large parts of a few protein sequences at a crude topological level (within 6.0 Å C α RMSD for ≈ 60 residues) [ 22 ] .
MD simulation has been used to study the movement of the flap region of HIV-1 protease with a ligand [ 25 26 27 28 29 30 ] . The flaps initially opened to an all-atom RMSD of 25 Å within 200 ps and became completely open at the end of a 10 ns simulation.
The resulting polymers were essentially identical with an RMSD on polymers of nine subunits of 0.87 Å on backbone atoms.
In the ab initio category, as with comparative modelling, the first CASP experiments did not live up to the results previously published in the literature [ 16 19 ] . It was not until CASP3 (the first time where we took part in this category) that the first consistent positive results were seen: several groups were able to predict the correct topologies for small proteins, or large fragments of a protein (~60-80 residues to about 6.0 Å C α RMSD relative to the experimental conformation) [ 22 25 ] .
As shown in Table 2, after 0.1 ps, the time scale that produced the best correlation coefficient, the average all-atom RMSD of the complex was only 0.35 Å, while the average all-atom RMSD of the flap region was 0.54 Å.