Words similar to rmsd

Example sentences for: rmsd

How can you use “rmsd” in a sentence? Here are some example sentences to help you improve your vocabulary:

In one case, T0092/yeco, the percentage identity between the target and template proteins in the alignment we used was 12%, but we predict 107 residues to within 6.0 Å C α RMSD.
The second CASP showed some improvement in two areas: In comparative modelling, loops were being built better, and the use of hand-inspected alignments greatly increased model accuracy [ 17 ] . In the fold recognition category, alignments as well as prediction of folds improved [ 18 ] . The results in the ab initio category remained virtually unchanged except for one model of the alpha-helical protein NK-Lysin predicted to within 6.0 Å C α RMSD, capturing the correct topology [ 19 ] .
Our filter-based scoring function approach generally picks conformations from the lower end of the RMSD distribution (usually within the top 1%, and no worse than the 10%, of the conformations sampled), but further improvements can be made.
In all cases where a three-dimensional model must be compared to an experimental structure, we use the root mean square deviation (RMSD) between corresponding atoms of the prediction and the experimental answer (usually calculated using the C α atoms).
Table 2shows the all-atom RMSD between each simulated complex and the corresponding protease-inhibitor x-ray structure.