Words similar to rmsd

Example sentences for: rmsd

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In the ab initio category, as with comparative modelling, the first CASP experiments did not live up to the results previously published in the literature [ 16 19 ] . It was not until CASP3 (the first time where we took part in this category) that the first consistent positive results were seen: several groups were able to predict the correct topologies for small proteins, or large fragments of a protein (~60-80 residues to about 6.0 Å C α RMSD relative to the experimental conformation) [ 22 25 ] .
The average all-atom RMSD for the complexes increases from 0.18 Å at 0.01 ps to 2.92 Å at the end of 10 ps of simulation time.
It is normally 7 Å RMSD from the active site and is in an open conformation in the native state [ 22 23 ] . The protease undergoes significant structural changes on binding to an inhibitor.
Both these domains share an unusual, common structural core that we term the BBM-core (BBMC) of about 40-50 residues with an RMSD of 2Å over the aligned region.
, the segmental RMSD's) between APE1 and representatives of the distantly related DNase 1 and IPP families are comparable to those found between members of the APE family (Figure 4and Table 1& 2).