Words similar to rmsd

Example sentences for: rmsd

How can you use “rmsd” in a sentence? Here are some example sentences to help you improve your vocabulary:

MD simulation has been used to study the movement of the flap region of HIV-1 protease with a ligand [ 25 26 27 28 29 30 ] . The flaps initially opened to an all-atom RMSD of 25 Å within 200 ps and became completely open at the end of a 10 ns simulation.
For 23 of these proteins, we produced models ranging from 1.0 to 6.0 Å root mean square deviation (RMSD) for the C α atoms between the model and the corresponding experimental structure for all or large parts of the protein, with model accuracies scaling fairly linearly with respect to sequence identity (i.e.
The results for the globin family are given in Figure 4. On average, using the all-atom function improves model quality by 0.8 Å C α RMSD compared to only using sequence identity.
In several cases where the alignment falls into the twilight zone (20-30% sequence identity), models around 4.0 Å C α RMSD are produced (T0122/trpa, T0112/dhso, T0125/spl8, T0121/malk).
As shown in Table 2, after 0.1 ps, the time scale that produced the best correlation coefficient, the average all-atom RMSD of the complex was only 0.35 Å, while the average all-atom RMSD of the flap region was 0.54 Å.