Words similar to repeatmatch
Example sentences for: repeatmatch
How can you use “repeatmatch” in a sentence? Here are some example sentences to help you improve your vocabulary:
We implemented an algorithm that uses either of two suffix tree methods, RepeatMatch [ 11] or REPuter [ 12] to determine all the exact repeats in a given sequence.
Examining the output of REPuter and RepeatMatch for a complete bacterial genome, it quickly becomes obvious that many exact repeats are non-exact copies of one another.
In this step, the output from REPuter or RepeatMatch is used to partition the original genome sequence.
We used REPuter in the example and in the subsequent repeat analyses of microbial genomes; for the A. thaliana genome and and the rice BAC end-sequence data we used RepeatMatch.)
Both RepeatMatch and REPuter are highly efficient computational tools that can find all exact repeats in sequences as long as complete eukaryotic chromosomes - 10-100 megabases (Mb).