Words similar to rearrangements

Example sentences for: rearrangements

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Fold predictions were done using the 3-D position specific score matrix (3DPSSM) [ 43 ] and the Hybrid fold method [ 44 ] . Phylogenetic analysis was carried out using the neighbor-joining algorithm, with subsequent local rearrangements using the maximum likelihood algorithm [ 45 ] . The robustness of tree topology was assessed with 10000 Resampling of Estimated Log Likelihoods (RELL) bootstrap replicates.
Pairwise evolutionary distances between the sequences in concatenated alignments were calculated using the Dayhoff PAM model as implemented in the PROTDIST program of the PHYLIP package [ 44 ] . A distance tree was constructed from the resulting distance matrix by using the least-square [ 46 ] method as implemented in the FITCH program of PHYLIP [ 44 ] . The maximum likelihood tree was constructed with the JTT-F model of amino acid substitutions [ 47 ] , as implemented in the ProtML program of the MOLPHY package [ 48 ] , by optimizing the least squares tree with local rearrangements.
This longer spacer length can be interpreted as arising from remnants of genes that were rendered functionless when rearrangements occurred.
The sequence differences of Igh-VS107 transcripts are readily explained by normal DNA rearrangements (V(D)J recombination) [ 23].
Figure 3illustrates several chemical rearrangements that closely parallel the chorismate mutase reaction.