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Example sentences for: rank-ordered
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The consecutive steps of the permutation validated PCA procedure are shown in Figure 1. In step 1, we perform rank-ordered PCA based on the polished gene expression matrix X (see Materials and methods) by computing separate oneway ANOVAs on the principal components loadings for each of the components.
Although PCA is generally not considered to be appropriate for grouped data, the method has been adapted for this data type (rank-ordered PCA [ 25]).
Table 1lists bona fide Drosophila miRNAs that scored in the top 208, grouped as members of the reference set followed by newly identified miRNAs that fulfill accepted criteria for miRNA biogenesis (that is, ones whose expression was confirmed here by northern blot and/or are homologous to miRNAs cloned in other species); each subset is rank-ordered by miRseeker score.
The top three Anopheles blast hits were subjected to the steps outlined in the previous sub-section and the best-scoring structure was determined and linked to rank-ordered Dm/Dp regions.
Representative regions were then rank-ordered by average Dm/Dp score.