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Example sentences for: queries
How can you use “queries” in a sentence? Here are some example sentences to help you improve your vocabulary:
To identify orthologous genes in Anopheles gambiae , 8,987 scaffolds from project accession number AAAB00000000 were downloaded from GenBank and searched using default parameters of TBLASTN 2.0 [ 77] with the D. melanogaster peptides listed in Supplementary Table 1 (see additional data files) as queries.
The notable exception is Mj-CM , which is postulated to encode chorismate mutase in M. javanica [ 20 ] . To examine why this gene was not identified by our filtering process, we used both Mj-CM sequences found in GenBank (AF095949, AF095950) in a series of BLASTX queries.
Protein sets (proteomes) from the following pairs of complete genome sequences were compared in order to identify orthologous sequences: S. cerevisiae - S. pombe , S. cerevisiae - C. elegans , H. pylori strain 26695 - H. pylori strain J99, H. pylori strain 26695 - C. jejuni . Pairs of proteomes were compared using the BLASTP program [ 18 ] , with post-processing of results done using the SEALS package [ 19 ] . For each proteome, individual proteins were used as queries in BLASTP searches against the entire proteome of the other analyzed species (or strain).
Queries should not exceed 200 words in length.
A lower limit of detection was previously defined using our platform by developing a negative control threshold in order to assign a confidence level to such signal or noise queries [ 6 ] . Briefly, this threshold was determined by taking the mean signal of bacterial negative control probes mentioned above (minus a 10% trim to account for weak cross hybridization of high expressers or for true hybridization to sequences not in the database) and adding three standard deviations (99.
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