Words similar to quartop
Example sentences for: quartop
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While pairwise sequence identity is not a universally dependable measure of phylogenetic information content, these values illustrates that the sequences within a QuartOP are neither identical to one another, nor so divergent as to be saturated with substitutions and of questionable homology [ 30 ] . Using only the most conserved QuartOPs does not change the qualitative result: each of the three possible tree topologies is supported by about an equal number of QuartOPs (see supplementary material).
4Awith a cut-off of 10 -20, i.e., we not only required the sequences in a QuartOP to be each others top hit, but in addition we asked for a high similarity between the two sequences.
The maximum-likelihood mapping approach was further used to visualize support for each tree topology [ 24 ] , i.e. the posterior probability vector for each QuartOP was plotted into an equilateral triangle.
An offline version of the QuartOP web page is available as a compressed archive named supp_material.zip and as a self-extracting archive supp_material.exe for Microsoft Windows users.
To access the level of sequence conservation within the QuartOPs' sequences, we calculated the average percentage of pairwise identity per QuartOP.
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