Words similar to pylori
Example sentences for: pylori
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Towards this end, orthologs between the two completely sequenced H. pylori strains were identified and the substitution rates between pairs of orthologous proteins were calculated (see Methods).
[ 11] analyzed strains of Helicobacter pylori using a spotted microarray based primarily on the strain 26695 genome sequence, with additional spots representing strain J99-specific genes.
We selected eight genomes from archaea: Archaeoglobus fulgidus (AF), Aeropyrum pernix K1 (AP), Halobacterium sp. (HS), Methanococcus jannaschii (MJ), Methanobacterium thermoautotrophicum (MT), Pyrococcus abyssi (PA), Pyrococcus horikoshii (PH), and Thermoplasma acidophilum (TA); 14 genomes from bacteria: Aquifex aeolicus (AA), Borrelia burgdorferi (BB), Bacillus subtilis (BS), Chlamydia pneumoniae strain AR39 (CP), Chlamydia trachomatis (CT), E. coli strain K12 (EC), Haemophilus influenzae (HI), Helicobacter pylori strain 26695 (HP), Mycobacterium tuberculosis (MyTu), Mycoplasma genitalium (MG), Mycoplasma pneumoniae (MP), Rickettsia prowazekii (RP), Synechocystis sp. (SS), and Treponema pallidum (TP); four genomes from eukaryotes: Saccharomyces cerevisiae (SC), D. melanogaster (DM), C. elegans (CE), and Arabidopsis thaliana (AT).
Protein sets (proteomes) from the following pairs of complete genome sequences were compared in order to identify orthologous sequences: S. cerevisiae - S. pombe , S. cerevisiae - C. elegans , H. pylori strain 26695 - H. pylori strain J99, H. pylori strain 26695 - C. jejuni . Pairs of proteomes were compared using the BLASTP program [ 18 ] , with post-processing of results done using the SEALS package [ 19 ] . For each proteome, individual proteins were used as queries in BLASTP searches against the entire proteome of the other analyzed species (or strain).
However, E. coli and H. pylori each contain about 200 fully annotated restriction enzymes, and the average G+C content of their target sites is 73% and 60% respectively.
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