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Example sentences for: predictprotein

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Identification and statistical evaluation of conserved motifs in multiple protein sequences were performed using the Gibbs sampling method as implemented in the MACAW program [ 105 106 ] . Pattern searches were conducted using the GREF program of the SEALS package [ 107 ] , and pattern-initiated BLAST searches were carried out using the PHI-BLAST program [ 60 ] ?. Protein structure databases were searched for similar structures using the DALI program [ 108 ] . Protein secondary structure was predicted using the PHD program implemented on the PredictProtein server with a multiple alignment submitted as the [ 109 110 ] . Protein structures were visualized and manipulated using the Swiss-PDB viewer program [ 111 ] and the ribbon diagrams were made using MOLSCRIPT [ 112 ] .
Positions of transmembrane domains in ORs were predicted using the PHD topology routine [ 77] at PredictProtein server at EMBL, Heidelberg [ 78].