Words similar to parser

Example sentences for: parser

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The results generated by the pipeline were filtered using the Bioinformatics Output Parser (BOP) [ 51], and the filtered results were curated using the tool Apollo [ 52].
Berkeley Output Parser filtering
In addition to the domains from SCOP, we have included domains parsed using the protein domain parser (PDP) [ 15 ] , full-length Protein Data Bank (PDB) chains and chains not classified by SCOP, but associated with SCOP using combinatorial extension (CE), a structural-similarity search algorithm [ 16 ] . The result is a comprehensive fold library (FOLDLIB) from which comparative and fold recognition models of three-dimensional structure are derived.
Data were filtered using the Bioinformatics Output Parser (BOP), which also assembled all EST and full-insert cDNA sequence reads from a particular cDNA clone into a virtual assembly (BOP [ 12]).