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Example sentences for: oric

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Fuzznuc (EMBOSS; http://www.hgmp.mrc.ac.uk/Software/EMBOSS/index.html) was used to identify potential DnaA boxes in the M. paratuberculosis oriC region.
Beginning with nucleotide number 1 in the dnaA coding region of each genome, a comparison of 2 million bases of M. paratuberculosis with 2 million bases from M. avium by Pustell DNA matrix analysis [ 25 ] , indicates that genomic similarity continues outside the surrounding oriC region (Fig.
Likewise, the oriC region in M. paratuberculosis was found to share a high level of nucleotide identity (~98%) with M. avium . Calculation of the rates of total nucleotide diversity (3) and synonymous substitution per synonymous site (ds) and non-synonymous substitution per non-synonymous site (dn) revealed patterns of variation within the range observed from sequence data outside the oriC region.
An ~11-kb contiguous genomic fragment from M. paratuberculosis was amplified and sequenced using 15 primer pairs designed from M. avium genomic sequence in the putative oriC region (Fig.
The M. paratuberculosis oriC region conforms to the conserved gene order that is present in other mycobacteria as well as the closely related Streptomyces coelicolor . Even the more distantly related Bacillus subtilis shows some degree of synteny in this region.