Words similar to operonic
Example sentences for: operonic
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In either case, one would expect that the sequences encoded by the operonic genes of Anabaena would be the best matches for the operonic genes of Nostoc , as was indeed the case.
As BLAST hits must be considered imperfect indicators of nearest-neighbor homologs [ 38], the conclusion that the operonic trp -pathway genes are of cyanobacterial lineage origin was confirmed more rigorously by examination of extensive trees (available upon request) constructed for each trp protein of Anabaena and Nostoc . For the Trp-pathway proteins, all the cyanobacterial proteins clustered together, regardless of whether they were Anabaena or Nostoc paralogs or whether they were the singly represented proteins of Synechocystis, Synechococcus , or Prochlorococcus . The same result was obtained for AroA Iβ protein trees.
These include the overall gene organization of the trp operon, for which many microbial patterns are known; the extremely rare gene order of trpEa trpEb instead of the typical order trpEb trpEa; the fusion of genes encoding the alpha ( trpAa ) and beta ( trpAb ) subunits of anthranilate synthase, a fusion that exists in only a limited number of other taxa, and the presence of operonic genes exhibiting distinctive homology subtypes ( aroA Iβ and tyrA (p) ).
Only the two operonic fusion proteins from Anabaena and Nostoc and the four rhizobial fusion proteins (Mlo, Bme, Rme and Atu) exhibit linker regions of identical length and obvious similarity.
For all of the operonic Anabaena/Nostoc Trp-pathway proteins used as queries, homolog sequences from other cyanobacteria ( Synechocystis, Synechococcus, Prochlorococcus ) were the remaining top hits returned in the BLAST queue.