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Example sentences for: mrbayes
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For the genome quartet #8 we calculated posterior probabilities under the model which takes ASRV into account with Strimmer and von Haeseler's [ 24 ] approach and with the MrBayes program version 2.01 [ 31 ] . TREE-PUZZLE 5.0 [ 56 ] was used to calculate posterior probabilities according to Strimmer and von Haeseler [ 24 ] . A discrete approximation of the gamma distribution [ 57 ] was used to describe ASRV.
Posterior probabilities were also calculated with MrBayes version 2.01 [ 31 ] . Each QuartOP was analyzed with two simultaneous Markov chains for 25,000 cycles under the JTT substitution model [ 55 ] without ASRV.
1), i.e., 67% posterior probability as estimated by MrBayes and unsupported as measured by parsimony bootstrap analysis (<50%).
For calculation of posterior probabilities with MrBayes at least 25,000 cycles were used.
Comparing figure 4Bwith 4Ait is clear that in this case the Bayesian posterior probabilities estimated with MrBayes are more conservative assessments of reliability than the ones calculated according to [ 24 ] . The 99% support level calculated according to [ 24 ] approximately corresponds to the 90% support level calculated with MrBayes.
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