Words similar to meloidogyne
Example sentences for: meloidogyne
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For instance, the Meloidogyne search included all dbEST sequences in the 'other nematode' set, resulting in matches for 61% of all clusters, whereas the Brugia search used only protein sequences in GenBank and saw matches in only around 12% of cases.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
The 20% of contigs (353) that had no homology may contain novel or diverged amino-acid coding sequences that are specific to Meloidogyne species or even to M. incognita only.
Second, both organisms establish intimate developmental interactions with host plants, and mounting evidence suggests that the mechanisms for these interactions are also shared [ 31 ] . It seems a reasonable hypothesis that the origin of parasitism in Meloidogyne may have been facilitated by acquisition of genetic material from soil bacteria through horizontal transfer.
InterProScan was used to match Meloidogyne clusters to characterized protein domains (5,875 entries) in the InterPro database [ 37 ] . Existing mappings of InterPro domains allowed placement of Meloidogyne clusters into the GO hierarchy, viewed locally with the AmiGO browser.
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