Words similar to meloidogyne
Example sentences for: meloidogyne
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Of the M. incognita contigs 188 had high-level nucleotide identity (better than 1e-30) to this collection of SL1-containing Meloidogyne genes.
Following clustering, comparative analyses were performed using WU-BLASTX and WU-TBLASTX [ 92 93 ] with 1,798 contig consensus sequences (themselves grouped into 1,625 cluster groups) as queries versus multiple databases including SWIR v.21 (5/19/2000) non-redundant protein database and Wormpep v.54 C. elegans protein database (Wellcome Trust Sanger Institute, unpublished work), C. elegans mitochondrial protein sequences, and six internally constructed databases using intersections of data from the GenBank nucleotide database and dbEST [ 96 ] . These include: nemnoele (all nucleotide data from the phylum Nematoda with C. elegans removed); nemnoelenomi (nemnoele with M. incognita removed); nemnoelenomel (nemnoele with all Meloidogyne species removed); nemnoelenotyl (nemnoele with all Tylenchida species removed); yestylnomel (all Tylenchida species except Meloidogyne ); mj (only M. javanica sequences).
The most striking initial differences in M. incognita GO representation from the other three species were for molecular function, where 52% of Meloidogyne clusters had ligand-binding/carrier mappings versus 24-28% for the other species, and cellular component, where 15% of M. incognita clusters had extracellular mappings versus 0-2% for the other species.
Using the criterion that the C. elegans gene was the best match available for one of the Meloidogyne clusters and RNAi experimental information was available, 539 genes were revealed.
C. elegans . The presence of glyoxylate pathway enzymes in Meloidogyne L2 provides experimental support for the model describing this larval stage as the functional equivalent of the C. elegans dauer larva [ 41 ] . These ESTs and their corresponding cDNA clones will be useful reagents for the further study of the glyoxylate pathway in different stages of the Meloidogyne life cycle.