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Example sentences for: mcpromoter

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As an initial test of this idea, we ran McPromoter with a very low threshold of 0.75 on the whole genome, and retained all the hits as long as they were more than 100 bp apart.
Leaving the threshold at 0.8, McPromoter predicts TSSs for 1,017 genes (47.
Looking for coincidences between the TSSs predicted by McPromoter and the genomic positions of the 5' ends of these ESTs is likely to be a powerful approach.
The McPromoter system consists of a generalized hidden Markov model of a promoter sequence, with six interpolated Markov chain submodels representing different segments of the promoter sequence from -250 to +50: upstream 1 and 2, TATA box, spacer, initiator and downstream.
With the help of a larger training set, we were able to significantly improve the performance of McPromoter, our computational TSS prediction tool.