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Example sentences for: mcpromoter

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We took advantage of our new large TSS set to retrain McPromoter (see Materials and methods).
When McPromoter was trained on the same, smaller, dataset as NNPP, the reduction in false positives was only about three- to sixfold (data not shown; for details see [ 34]).
The McPromoter system output ranges from 0 to 1, and Table 5gives the results for a number of thresholds between 0.98 and 0.8; additional predictions below 0.7 are no longer distinguishable from randomly spaced predictions (see [ 34] for discussion).
Looking for coincidences between the TSSs predicted by McPromoter and the genomic positions of the 5' ends of these ESTs is likely to be a powerful approach.
Of the set of 1,941 TSSs used for retraining McPromoter, 423 correspond to genes located on arm 2R.