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Example sentences for: mappings

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Meloidogyne extracellular mappings (15 clusters) were all within the category of SCP/Tpx-1/Ag5/PR-1/Sc7 extracellular proteins (InterPro domain IPR001283) and showed homology to the genes vap-1 from H. glycines and Mi-msp-1 from M. incognita [ 40 41 ] , both venom allergen antigen 5 family members with homologs in numerous nematodes including hookworms and C. elegans [ 42 ] . Categories that particularly contributed to the abundance of ligand-binding/carrier mappings for Meloidogyne included EF-hand calcium binding (22 clusters), RNA recognition motif (18 clusters), and a variety of ATP-binding domains (20 clusters).
EC numbers were assigned to 258 clusters (16% of total), of which 176 (11%) had mappings to KEGG biochemical pathways (361 total and 212 unique mappings).
InterProScan was used to match Meloidogyne clusters to characterized protein domains (5,875 entries) in the InterPro database [ 37 ] . Existing mappings of InterPro domains allowed placement of Meloidogyne clusters into the GO hierarchy, viewed locally with the AmiGO browser.
A complete listing of GO mappings is available as additional data with the online version of this article.
Complete KEGG biochemical pathway mappings for M. incognita