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Example sentences for: lbnl

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Both of the sequencing centers that participated in the finishing effort, Lawrence Berkeley National Laboratory (LBNL) and the Human Genome Sequencing Center, Baylor College of Medicine (HGSC), have extensive experience in finishing the sequence of individual BAC clones.
The programs Assemble-arms (LBNL) or BACstitcher (HGSC) was used to generate a FASTA file of the chromosome arms, starting with the first BAC in the tiling path and adding the unique sequence from the adjoining BAC to extend the sequence contig.
0. At LBNL, BAC end sequences were manually tagged, and if the assembly was in more than one contig, gap sizes were estimated using Consed and phrapview version 0.960731 [ 10].
LBNL and HGSC sequenced 10-kb clones using different strategies as part of the finishing process.
At LBNL, Release 3 BAC sequence assemblies were also compared to the Release 2 sequence from that region using Sim4 to analyze the large-scale assembly, and Sim3 to identify base-pair differences.