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Example sentences for: lbnl

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At LBNL, Release 3 BAC sequence assemblies were also compared to the Release 2 sequence from that region using Sim4 to analyze the large-scale assembly, and Sim3 to identify base-pair differences.
LBNL and the HGSC used slightly different strategies for gap filling.
0. At LBNL, BAC end sequences were manually tagged, and if the assembly was in more than one contig, gap sizes were estimated using Consed and phrapview version 0.960731 [ 10].
The programs Assemble-arms (LBNL) or BACstitcher (HGSC) was used to generate a FASTA file of the chromosome arms, starting with the first BAC in the tiling path and adding the unique sequence from the adjoining BAC to extend the sequence contig.
Final BAC assemblies were then verified by comparing the virtual restriction digest to Eco RI, Bam HI and Hind III fingerprints produced by HGSC and manually called at LBNL and HGSC.