Words similar to jtt-f

Example sentences for: jtt-f

How can you use “jtt-f” in a sentence? Here are some example sentences to help you improve your vocabulary:

Shimodaira-Hasegawa tests [ 17 ] were performed in PAML [ 30 ] (JTT-F option, fixed gamma); p-values for each topology were recorded.
Pairwise evolutionary distances between the sequences in concatenated alignments were calculated using the Dayhoff PAM model as implemented in the PROTDIST program of the PHYLIP package [ 44 ] . A distance tree was constructed from the resulting distance matrix by using the least-square [ 46 ] method as implemented in the FITCH program of PHYLIP [ 44 ] . The maximum likelihood tree was constructed with the JTT-F model of amino acid substitutions [ 47 ] , as implemented in the ProtML program of the MOLPHY package [ 48 ] , by optimizing the least squares tree with local rearrangements.
In addition, phylogenetic analyses were conducted with maximum likelihood (JTT-F option) [ 31 ] and maximum parsimony (Max-Mini Branch & Bound option) [ 29 ] on combined data sets; in all cases they resulted in similar results (topology and significance) to the neighbor-joining analyses.