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Example sentences for: isrec

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Motifs and consensus domains can also be used as query patterns to search the protein databases using Patternfind http://www.isrec.isb-sib.ch/software/PATFND_form.html.
The strings served as an input to the Perl script prosite_scan (author: Kay Hofmann http://www.isrec.isb-sib.ch/ftp-server/prosite_scan/pattern_find) searching the nucleotide section of GenBank (downloaded April 12 th2000).
Database searches using Patternfind at the ISREC server were performed using parameters appropriate for short protein queries and were successful in identifying a human gene product, subunit p170 of eIF3 (Figure 3).
An alignment output from this source was used to create a dendrogram using TreeTop [ 45 ] with PHYLIP output (default parameters) at a node of the European Molecular Biology Network http://www.genebee.msu.su [ 47 ] . Potential phosphorylation sites were identified using NetPhos 2.0 http://www.cbs.dtu.dk/services/NetPhos [ 48 ] . After alignment with CLUSTAL W, identical and similar amino acids in Figure 3were identified using MacBoxshade 2.15 http://www.isrec.isb-sib.ch/ftp-server/boxshade/MacBoxshade.