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Example sentences for: influenzae
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The apparent goodness-of-fit actually gets better as window size decreases as illustrated in Figure 2for three indicated window sizes on the Haemophilus influenzae sequence.
While active turnover of new strains of nontypeable H. influenzae occurs, some strains have the ability to persist for many months.
We start however with the understanding that the sequence is fundamentally nonstationary, exhibiting statistically significant variations in base frequencies between non-overlapping windows [ 1 2 ] . Locally or globally estimated Markov models may describe it better than assuming that the bases are independent and identically distributed [ 19 ] but they fail to reflect the salient features of natural sequences [ 20 ] . For example, Robin and Daudin [ 21 ] compared the frequency of a specific motif in the genome sequence of Haemophilus influenzae to Markovian predictions and found that the observed frequencies were everywhere higher than predicted.
Data from the following species were assembled into presumptive orthology groups (hereafter, proteins) and aligned [ 36 ] : Aquifex aeolicus , Bacillus subtilis , Borrelia burgdorferi , Chlamydia trachomatis , Escherichia coli , Haemophilus influenzae , Helicobacter pylori, Mycobacterium tuberculosis, Mycoplasma genitalium, Mycoplasma pneumoniae , Rickettsia prowazekii, Synechocystis sp., and Treponema pallidum (Eubacteria), Archaeoglobus fulgidus, Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Pyrococcus abyssi , and P. horikoshii (Archaebacteria: Euryarchaeota), and Arabidopsis thaliana, Caenorhabditis elegans, Dictyostelium discoideum, Drosophila melanogaster, Gallus gallus, Homo sapiens, Mus musculus, Oryza saticva, Plasmodium falciparum, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Trypanosoma sp. , and Xenopus laevis (Eukaryota).
Rabbit polyclonal antiserum raised to a peptide corresponding to loop 6 of outer membrane protein P2 recognizes P2 of many strains of nontypeable H. influenzae was described previously [ 33 ] .
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